TRANSTERM - A DATABASE OF TRANSLATIONAL SIGNALS

Citation
Me. Dalphin et al., TRANSTERM - A DATABASE OF TRANSLATIONAL SIGNALS, Nucleic acids research, 24(1), 1996, pp. 216-218
Citations number
23
Categorie Soggetti
Biology
Journal title
ISSN journal
03051048
Volume
24
Issue
1
Year of publication
1996
Pages
216 - 218
Database
ISI
SICI code
0305-1048(1996)24:1<216:T-ADOT>2.0.ZU;2-E
Abstract
The TransTerm database of sequence contexts of stop and start codons h as been expanded to include similar to 50% more species than last year 's release. It now contains 148 organisms and >39 500 coding sequences ; it is now available on the World Wide Web. The database includes: (i ) initiation and termination sequence contexts organized by species; ( ii) summary parameters about the individual sequences (sequence length , GC%, GC3, Nc, CAI) in addition to tables of base frequencies for eac h species' stop and start codon sequence context; (iii) species codon usage tables; and (iv) summary tables of stop signal frequency.