S. Parkin et al., STRUCTURE OF BOVINE PANCREATIC TRYPSIN-INHIBITOR AT 125 K - DEFINITION OF CARBOXYL-TERMINAL RESIDUES GLY57 AND ALA58, Acta crystallographica. Section D, Biological crystallography, 52, 1996, pp. 18-29
Citations number
43
Categorie Soggetti
Crystallography,"Biochemical Research Methods",Biology
The structure of bovine pancreatic trypsin inhibitor has been refined
to a resolution of 1.1 Angstrom against data collected at 125 K. The s
pace group of the form II crystal is P2(1)2(1)2(1) with a = 75.39(3),
b =2 2.581(7), c = 28.606(9)Angstrom (cf. a = 74.1, b = 23.4, c = 28.9
Angstrom at room temperature). The structure was refined by restraine
d least-squares minimization of Sigma w(F-o(2) - F-c(2))(2) with the S
HELXL93 program. As the model improved, water molecules were included
and exceptionally clear electron density was found for two residues, G
ly57 and Ala58, that had been largely obscured at room temperature. Th
e side chains of residues Glu7 and Arg53 were modelled over two positi
ons with refined occupancy factors. The final model contains 145.6 wat
er molecules distributed over 167 sites, and a single phosphate group
disordered over two sites. The root-mean-square discrepancy between C(
alpha atoms in residues Arg1-Gly56 at room and low temperatures is 0.4
Angstrom. A comparison of models refined with anisotropic and isotrop
ic thermal parameters revealed that there were no significant differen
ces in atomic positions. The final weighted R-factor on F-2 (wR(2)) fo
r data in the range 10-1.1 Angstrom was 35.9% for the anisotropic mode
l and 40.9% for the isotropic model. Conventional R factors based on F
for F > 4 sigma(F) were 12.2 and 14.6%, respectively, corresponding t
o 16.1 and 18.7% on all data. These large R-factor differences were no
t reflected in values of R(free), which were not significantly differe
nt at 21.5(5) and 21.8(4)%, respectively. These results, along with th
e relatively straightforward nature of the refinement, clearly highlig
ht the benefits of low-temperature data collection.