The dam DNA methyltransferase gene from Escherichia coli was introduce
d into Drosophila in order to probe chromatin structure in vivo. Expre
ssion of the gene caused no visible defects or developmental delay eve
n at high levels of active methylase. About half of each target site w
as found to be methylated in vivo, apparently reflecting a general pro
perty of chromatin packaged in nucleosomes. Although site-specific dif
ferences were detected, most euchromatic and heterochromatic sites sho
wed comparable degrees of methylation, at least at high methylase leve
ls. Methylase accessibility of a lacZ reporter gene subject to positio
n-effect variegation throughout development was only slightly reduced,
consistent with studies of chromatin accessibility in vitro. Silencin
g of lacZ during development differed from silencing of an adjacent wh
ite eye pigment reporter gene in the adult, as though chromatin struct
ure can undergo dynamic alterations during development.