HYDRATION OF THE DNA BASES IS LOCAL

Citation
B. Schneider et Hm. Berman, HYDRATION OF THE DNA BASES IS LOCAL, Biophysical journal, 69(6), 1995, pp. 2661-2669
Citations number
41
Categorie Soggetti
Biophysics
Journal title
ISSN journal
00063495
Volume
69
Issue
6
Year of publication
1995
Pages
2661 - 2669
Database
ISI
SICI code
0006-3495(1995)69:6<2661:HOTDBI>2.0.ZU;2-3
Abstract
Ordered hydration sites were determined for the nucleotide bases in B- type conformations using the crystal structure data on 14 B-DNA decame r structures, A method of density representation was extended so that positions, occupancies, and distributions of the hydration sites were predicted around a B-DNA double helix by a method analogous to crystal lographic refinement. The predicted hydration sites correctly reproduc e the main features of hydration around the B-DNA dodecamer. In contra st to the previous observations, the newly available crystal data show the same extent of hydration of guanine and adenine, and of cytosine and thymine.