Ordered hydration sites were determined for the nucleotide bases in B-
type conformations using the crystal structure data on 14 B-DNA decame
r structures, A method of density representation was extended so that
positions, occupancies, and distributions of the hydration sites were
predicted around a B-DNA double helix by a method analogous to crystal
lographic refinement. The predicted hydration sites correctly reproduc
e the main features of hydration around the B-DNA dodecamer. In contra
st to the previous observations, the newly available crystal data show
the same extent of hydration of guanine and adenine, and of cytosine
and thymine.