The availability of a crystal structure and comparative sequences of t
he cholinesterases has provided templates suitable for analyzing the m
olecular bases of specificity of reversible inhibitors, carbamoylating
agents and organophosphates. Site-specific mutagenesis enables one to
modify the structures of both the binding site and peptide ligand as
well as create chimeras reflecting one type of esterase substituted in
the template of another. Herein we define the bases for substrate spe
cificity of carboxylesters, the stereospecificity of enantiomeric alky
lphosphonates and the selectivity of tricyclic aromatic compounds in t
he active center of cholinesterase. We also describe the binding loci
of the peripheral site and changes in catalytic parameters induced by
peripheral site ligands, using the peptide fasciculin.