Tandem mass spectrometry (MS/MS) employs two stages of mass analysis i
n order to examine selectively the fragmentation of particular ions in
a mixture of ions. The various types of instruments which can be used
to perform this experiment are described, including those based on se
paration of the mass-analysis events in time and those based on measur
ements in physically separate analysers. The several MS/MS scan types-
product scans, precursor scans and neutral loss scans-are presented an
d examples of their applications are provided. These include the chara
cterization of individual compounds and the recognition of groups of c
ompounds with specified functional groups. Applications are shown to t
he determination of compounds present in complex mixtures. The improve
ment in signal-to-noise ratio achieved by MS/MS when compounds are ion
ized by methods which produce high chemical noise is illustrated for c
holine derivatives. Fundamental aspects of collisional activation in t
he low and high collision energy range are reviewed.