Bl. Iverson et al., INTERACTION OF SAPPHYRIN WITH PHOSPHORYLATED SPECIES OF BIOLOGICAL INTEREST, Journal of the American Chemical Society, 118(7), 1996, pp. 1608-1616
A model for the interaction of the water-soluble sapphyrin derivative
1 with a variety of nucleic acid species is presented. Three modes of
interaction are described: The first mode, seen with all the nucleic a
cid species, is that of ''phosphate chelation''. This mode is exemplif
ied by a solid state structure of the complex formed between the monob
asic form of cAMP and the sapphyrin species [2H . 2](2+). It involves
the specific chelation of the oxyanion of a phosphorylated nucleotide
or nucleic acid species with the protonated core of sapphyrin via Coul
ombic interactions that include H-bonding interactions. Spectroscopica
lly, this interaction is characterized by a visible absorption at 422
nm and corresponds to complexes formed between the dimeric form of 1 a
nd phosphorylated nucleotides. In the case of double-stranded DNA, thi
s mode of binding shows a preference for the more flexible copolymer [
poly-(dA-dT)](2) over [poly(dG-dC)](2). The second mode involves a hyd
rophobic interaction with the nucleobases present in both monomeric an
d single-stranded polymeric nucleotides. Spectroscopically, this nucle
otide-dependent interaction is characterized by the absorption of the
monomeric species of 1 at ca. 450 nm. The third mode involves the high
ly ordered aggregation of 1 on the surface of certain double-stranded,
helical nucleic acids at low phosphate ester to sapphyrin (P/S) ratio
s and is templated by the higher order structure of these nucleic acid
polymers. Spectroscopically, this mode is characterized by a visible
absorption at ca. 400 nm and a large, conservative induced CD signal f
or 1.