Genetically divergent lineages often coexist within populations of the
annual legume Amphicarpaea bracteata. At one site dominated by two su
ch lineages (termed biotypes ''C'' and ''S''), isolates of root-nodule
bacteria (Bradyrhizobium sp.) were sampled from both hosts and analyz
ed by enzyme electrophoresis. Symbiont populations on the two plant bi
otypes were highly distinct. Out of 15 bacterial multilocus genotypes
detected (among 51 isolates analyzed),only one was shared in common by
the two plant biotypes. Cluster analysis revealed three bacterial lin
eages (designated I, II, and III), with lineage I found exclusively on
biotype C plants, and the two other lineages almost completely restri
cted to biotype S hosts. Laboratory inoculation tests indicated that l
ineage I bacteria were strictly specialized on biotype C hosts, formin
g few or no nodules on plants of the other host biotype. Bacterial lin
eages II and III were capable of forming nodules on both kinds of plan
ts, but nodule numbers were often significantly higher on biotype S ho
sts. The nonrandom association between plant and bacterial lineages at
this site implies that genetic diversity of hosts is an important fac
tor in the maintenance of polymorphism within the symbiont population.