We analyzed nucleotide variation in rbcL (the gene encoding the large
subunit of ribulose 1,5-bisphosphate carboxylase/oxygenase) from 99 ge
nera of leptosporangiate ferns representing 31 of the 33 extant famili
es. Phylogenetic relationships were inferred using three meth ods: nei
ghbor joining, maximum parsimony, and maximum likelihood. All three me
thods resulted in optimal trees that were similar. Within the context
of those taxa examined, these trees suggest that: 1) Polypodiaceae, Gr
ammitidaceae and Pleurosoriopsis form a monophyletic group that is mos
t derived among indusiate ferns; 2) Davallia is closely related to the
Polypodiaceae; 3) Tectoria is related to Oleandraceae rather than to
other members of Dryopteridaceae; 4) Rumohra and Elaphoglossum are clo
sely related; 5) Dryopteridaceae are polyphyletic; 6) a monophyletic g
roup consists of Polypodiaceae, Grammitidaceae, Davalliaceae, Oleandra
ceae, Nephrolepidaceae, Lomariopsidaceae, Dryopteridaceae, Thelypterid
aceae, Blechnaceae, Aspleniaceae, and Pleurosoriopsis; 7) Dennstaedtia
ceae, Monachosoraceae, Pteridaceae, Vittariaceae, and the previous cla
de form a monophyletic group; 8) Dennstaedtiaceae are polyphyletic; 9)
tree ferns in the Cyatheaceae, Metaxyaceae, and Dicksoniaceae form a
monophyletic group that emerged early in the diversification of leptos
porangiate ferns; 10) Plagiogyriaceae and Loxomataceae emerge with the
tree ferns; 11) heterosporous water ferns form a monophyletic group t
hat diverged prior to the tree ferns; 12) Schizaeaceae, Cheiropleuriac
eae, Dipteridaceae, Gleicheniaceae, Matoniaceae, and Hymenophyllaceae
are basal to the heterosporous aquatic ferns; and 13) Osmundaceae are
the most basal lineage of the leptosporangiate ferns.