E. Baath, THYMIDINE INCORPORATION OF BACTERIA SEQUENTIALLY EXTRACTED FROM SOIL USING REPEATED HOMOGENIZATION-CENTRIFUGATION, Microbial ecology, 31(2), 1996, pp. 153-166
Bacteria were sequentially extracted from soil into a water suspension
after shaking soil with water or mixing it in a blender followed by a
low-speed centrifugation. Bacteria, which were released only after se
veral cycles of homogenization-centrifugation, had higher growth rates
as judged from thymidine and leucine incorporation, whereas bacteria
that were more readily released by a gentle shaking procedure had the
lowest growth rate. This indicated that bacteria more tightly bound to
soil particles were growing faster than those that were more easily r
eleased into the water suspension. The same pattern was found both in
an agricultural and a forest soil, with contrasting pH and organic mat
ter content, and irrespective of whether the bacteria were labeled bef
ore or after the centrifugation steps. The different growth rates of t
he bacteria could not be explained by different partitioning of label
between different macromolecules, different cell size, different viabi
lity of the bacteria, or different dilution of the added radioactive s
ubstrate in the different homogenization-centrifugation fractions. The
total amount of phospholipid fatty acids per bacterial cell was also
similar in the different fractions. Different composition of the bacte
rial communities in the different homogenization-centrifugation fracti
ons was indicated by a gradually altered phospholipid fatty acid patte
rn of the extracted bacteria, and an increased hydrophobicity of the b
acteria released only after several homogenization-centrifugation trea
tments.