Electrospray ionization mass spectrometry was used to investigate the
structure of the Escherichia coli chaperone protein SecB. It was deter
mined that the N-terminal methionine of SecB has been removed and that
more than half of all SecB monomers are additionally modified, most l
ikely by acetylation of the N-terminus or a lysine. The use of gentle
mass spectrometer interface conditions showed that the predominant, ol
igomeric form of SecB is a tetramer that is stable over a range of sol
ution pH conditions and mass spectrometer interface heating (i.e., inl
et capillary temperatures). At very high pH, SecB dimers are observed.
SecB contains a region that is hypersensitive to cleavage by proteina
se K and is thought to be involved in conformational changes that are
crucial to the function of SecB. We identified the primary site of cle
avage to be between Leu 141 and Gin 142. Fourteen amino acids are remo
ved, but the truncated form remains a tetramer with stability similar
to that of the intact form.