Binary mating types are proposed to arise in a three-stage process thr
ough selection of nuclear genes to minimize cytoplasmic gene conflict
at the time of gamete fusion. In support of this view we argue that: (
i) in systems with fusion of gametes, the mating type genes are typica
lly binary and regulate cytoplasmic inheritance; (ii) binary sexes hav
e evolved several times independently associated with fusion, although
at least twice binary types have been lost, associated with a loss of
fusion; further, in accordance with the theory are findings for isoga
mous species that (iii) close inbreeding may correlate with less than
two sexes and biparental inheritance of cytoplasmic genes; and (iv) sp
ecies with more than two sexes may have uniparental inheritance of cyt
oplasmic genes, be rare and be afflicted by deleterious cytoplasmic ge
nes which attempt to pervert normal cytoplasmic genetics. Such facts a
nd their rationale support a new and unified definition of sexes based
on the control of the inheritance of cytoplasmic genes. For the commo
n cases, the male sex is that which resigns attempts to contribute cyt
oplasmic genes to the next generation. We differentiate between sexes
and the incompatibility types of ciliates, basidiomycetes, some angios
perms and a few other organisms which are independent of organelle con
tribution.