Three trypsin inhibitors from Sicyos australis, have been isolated, pu
rified and sequenced. Following protein extraction with ammonium sulph
ate, the mixture of inhibitors was separated from other proteins by tr
ypsin-affinity chromatography. Subsequent purification of the individu
al inhibitors was accomplished by reversed-phase HPLC. The primary str
uctures of each inhibitor were elucidated by a combination of protein
sequencing and electrospray ionization mass spectrometry (ESI-MS) and
tandem mass spectrometry (MS-MS) on both the untreated and the reduced
and S-carboxymethylated inhibitors. All three inhibitors show extensi
ve sequence similarity with inhibitors from cultivated Cucurbitaceae s
pecies, although there are a number of novel residues present. One of
the inhibitors has a blocked N-terminus (pyroglutamic acid) and the us
e of MS-MS was crucial to the elucidation of its primary structure. ES
I-MS was further used to characterize the non-covalent complex between
one of the inhibitors and trypsin.