FURTHER DEVELOPMENT OF A REACTION GENERATOR IN THE SOPHIA SYSTEM FOR ORGANIC-REACTION PREDICTION - KNOWLEDGE-GUIDED ADDITION OF SUITABLE ATOMS AND OR ATOMIC GROUPS TO PRODUCT SKELETON/
H. Satoh et K. Funatsu, FURTHER DEVELOPMENT OF A REACTION GENERATOR IN THE SOPHIA SYSTEM FOR ORGANIC-REACTION PREDICTION - KNOWLEDGE-GUIDED ADDITION OF SUITABLE ATOMS AND OR ATOMIC GROUPS TO PRODUCT SKELETON/, Journal of chemical information and computer sciences, 36(2), 1996, pp. 173-184
Citations number
9
Categorie Soggetti
Information Science & Library Science","Computer Application, Chemistry & Engineering","Computer Science Interdisciplinary Applications",Chemistry,"Computer Science Information Systems
A reaction generator-in SOPHIA (system for organic reaction prediction
by heuristic approach) generates all possible product structures by r
econnections of free bonds obtained by cutting all bonds of a reaction
site which is automatically perceived in the input reactantt structur
e and additions of atoms and/or atomic groups (AAG) to the free bonds.
The reaction generator has been extended to automatically recognize a
nd add suitable AAG for suitable free bonds by utilizing knowledge bas
e derived from a reaction database. Contents of the knowledge base are
structural information of AAG and structural characteristics of sites
and their environments to which the AAG are added during reactions in
a reaction database. The reaction generator considers reaction condit
ions to recognize suitable AAG for suitable free bonds by utilizing re
action condition groups obtained by classification based on word combi
nations of reaction condition descriptions in a reaction database. SOP
HIA also has been extended to employ the reaction condition groups for
interpretation of reaction conditions entered by the user and to cons
ider the reaction conditions in reaction prediction procedures. This p
aper describes the contents and structure of the knowledge base, the r
eaction condition classification, and implementation of the reaction p
rediction using these results.