4-OXALOCROTONATE TAUTOMERASE, A 41-KDA HOMOHEXAMER - BACKBONE AND SIDE-CHAIN RESONANCE ASSIGNMENTS, SOLUTION SECONDARY STRUCTURE, AND LOCATION OF ACTIVE-SITE RESIDUES BY HETERONUCLEAR NMR-SPECTROSCOPY
Jt. Stivers et al., 4-OXALOCROTONATE TAUTOMERASE, A 41-KDA HOMOHEXAMER - BACKBONE AND SIDE-CHAIN RESONANCE ASSIGNMENTS, SOLUTION SECONDARY STRUCTURE, AND LOCATION OF ACTIVE-SITE RESIDUES BY HETERONUCLEAR NMR-SPECTROSCOPY, Protein science, 5(4), 1996, pp. 729-741
4-Oxalocrotonate tautomerase (4-OT), a homohexamer consisting of 62 re
sidues per subunit, catalyzes the isomerization of unsaturated oc-keto
acids using Pro-1 as a general base (Stivers et al., 1996a, 1996b). W
e report the backbone and side-chain H-1, N-15, and C-13 NMR assignmen
ts and the solution secondary structure for 4-OT using 2D and 3D homon
uclear and heteronuclear NMR methods. The subunit secondary structure
consists of an alpha-helix (residues 13-30), two beta-strands (beta(1)
, residues 2-8; beta(2), residues 39-45), a beta-hairpin (residues 50-
57), two loops (I, residues 9-12; II, 34-38), and two turns (I, residu
es 30-33; II, 47-50). The remaining residues form coils. The beta(1) s
trand is parallel to the beta(2) strand of the same subunit on the bas
is of cross strand NHi-NHj NOEs in a 2D N-15-edited H-1-NOESY spectrum
of hexameric 4-OT containing two N-15-labeled subunits/hexamer. The b
eta(1) strand is also antiparallel to another beta(1) strand from an a
djacent subunit forming a subunit interface. Because only three such p
airwise interactions are possible, the hexamer is a trimer of dimers.
The diffusion constant, determined by dynamic light scattering, and th
e rotational correlation time (14.5 ns) estimated from N-15 T-1/T-2 me
asurements, are consistent with the hexameric molecular weight of 41 k
Da. Residue Phe-50 is in the active site on the basis of transferred N
OEs to the bound partial substrate 2-oxo-1,6-hexanedioate. Modificatio
n of the general base, Pro-1, with the active site-directed irreversib
le inhibitor, 3-bromopyruvate, significantly alters the amide N-15 and
NH chemical shifts of residues in the beta-hairpin and in loop II, pr
oviding evidence that these regions change conformation when the activ
e site is occupied.