The microflora associated with three dentoalveolar abscesses was deter
mined by cultural and molecular methods. 16S rRNA genes were randomly
amplified by means of conserved eubacterial primers and cloned. Restri
ction fragment length polymorphism analysis of the clones and amplifie
d genes encoding 16S rRNA from the cultured bacteria was used to detec
t putative unculturable bacteria. Clones representative of five predom
inant groups of uncultured organisms were sequenced. Two were identifi
ed as Porphyromonas gingivalis and Prevotella oris, and one was found
to be closely related to Peptostreptococcus micros. The remaining two
clones did not correspond to known, previously sequenced organisms. On
e was related to Zoogloea ramigera, a species of aerobic waterborne or
ganisms, while the other was distantly related to the genus Prevotella
. This study has demonstrated the possibility of the characterization
of microflora associated with human infection by molecular methods wit
hout the inherent biases of culture.