Scanning tunneling microscopy (STM) images have been obtained for the
nucleic acid bases, adenine and thymine, deposited on Pd(110) single-c
rystal substrates in order to study the electronic structure and inter
action between the DNA bases. The adenine and thy-mine molecular image
s are different, with distinct shapes and lateral dimensions that refl
ect the contours of the calculated molecular orbitals. Thus, adenine h
as triangular protrusions with lateral dimensions of similar to 0.8 nm
and thymine has round features of diameter similar to 0.45 nm. Adenin
e tends to form dimers whereas thymine forms islands even at low eover
ages.