J. Apostolakis et al., FREE-ENERGY COMPUTATIONS ON THE SHIFT OF THE SPECIAL PAIR REDOX POTENTIAL - MUTANTS OF THE REACTION-CENTER OF RHODOBACTER-SPHAEROIDES, Journal of the American Chemical Society, 118(15), 1996, pp. 3743-3752
Shifts of the special pair redox potential of photosynthetic reaction
centers of Rhodobacter sphaeroides for five different mutants are cons
idered. The shifts are calculated by the method of free energy perturb
ation which is based on dynamics simulation data. The influence of the
orientation and the torsion potential of the acetyl group on the shif
t,of the redox potential is investigated and compared with recent resu
lts obtained by solving Poisson's equation. Int the oxidized state of
the special pair the acetyl group at DL reorients in the initial part
of the dynamics simulation. As a consequence, the hydrogen bond with H
(L168) breaks and the oxygen atom binds to the Mg2+ ion of DM. For I:h
e mutant EY(M197) there is evidence that the acetyl oxygen atom of D-M
binds to the Mg2+ ion of DL instead of forming a hydrogen bond with Y
(M197).