Trapoxin is a microbially derived cyclotetrapeptide that inhibits hist
one deacetylation in vivo and causes mammalian cells to arrest in the
cell cycle. A trapoxin affinity matrix was used to isolate two nuclear
proteins that copurified with histone deacetylase activity. Both prot
eins were identified by peptide microsequencing, and a complementary D
NA encoding the histone deacetylase catalytic subunit (HD1) was cloned
from a human Jurkat T cell library. As the predicted protein is very
similar to the yeast transcriptional regulator Rpd3p, these results su
pport a role for histone deacetylase as a key regulator of eukaryotic
transcription.