Se. Volk et al., EFFECT OF E20D SUBSTITUTION IN THE ACTIVE-SITE OF ESCHERICHIA-COLI INORGANIC PYROPHOSPHATASE ON ITS QUATERNARY STRUCTURE AND CATALYTIC PROPERTIES, Biochemistry, 35(15), 1996, pp. 4662-4669
Glutamic acid 20 is an evolutionarily conserved residue found within t
he active site of the inorganic pyrophosphatase of Escherichia coli (E
-PPase). Here we determine the effect of E20D substitution on the quat
ernary structure and catalytic properties of E-PPase. In contrast to w
ild-type enzyme, which is hexameric under a variety of conditions, E20
D-PPase can be dissociated by dilution into nearly inactive trimers, a
s shown by electrophoresis of cross-linked enzyme, analytical ultracen
trifugation, and measurement of catalytic activity as a function of en
zyme concentration, Hexamer stability is increased in the presence of
both substrate and Mg2+, is maximal at pH 6.5, and falls off sharply a
s the pH is lowered or raised from this value. Measured at saturating
substrate, 20 mM Mg2+ and pH 7.2, E20D substitution (a) decreases acti
vity toward inorganic pyrophosphate (PPi) hydrolysis and oxygen exchan
ge between water and inorganic phosphate (P-i), (b) increases the rate
of net PPi synthesis, and (c) decreases the amount of enzyme-bound PP
i in equilibrium with P-i in solution. Measurements of PPi hydrolysis
rate as a function of both Mg2+ concentration and pH for the E20D vari
ant show that its decreased activity is largely accounted for on the b
asis of an increased pK(a) of the catalytically essential base at the
active site, and the need for a Mg2+ stoichiometry of 5 in the enzyme-
substrate complex, similar to what is seen for the D97E variant. By co
ntrast, wild-type PPase catalysis over a wide range of Mg2+ concentrat
ion and pH is dominated by an enzyme-substrate complex having a total
of four Mg2+ ions. These results are consistent with a supporting role
for Glu20 in PPase catalysis and demonstrate that even conservative m
utation at the active site can perturb the quaternary structure of the
enzyme.