The cloned y1 locus of maize was sequenced and found to encode phytoen
e synthase. Different ''wild-type'' alleles of the locus were found to
differ by the insertion of transposable elements in their promoter an
d polyA addition regions, and by the length of a CCA tandem repeat ser
ies, without any obvious effect on function of the gene. A dominant Y1
(''wild-type'') allele was observed to be expressed at highest levels
in the seedling but also in the embryo and endosperm. The Mu3 transpo
sable element insertion responsible for a pastel allele of y1, which g
ives lowered levels of carotenoids in the endosperm of kernels and see
dlings grown at high temperatures, was located in the 5' end of the ge
ne. Although the size of the transcript from this y1 mutation suggests
that the Mu3 element provides the promoter for this allele, leaf tiss
ue in this mutant line contained approximately normal amounts of y1 mR
NA. A recessive allele of y1, which conditions normal levels of carote
noids in the embryo and seedling, but almost no carotenoids in the end
osperm, was found to accumulate normal amounts of y1 mRNA in the seedl
ing and embryo, while y1 transcripts were not detected in the endosper
m.