Amoebapores are cytolytic peptides of Entamoeba histolytica which func
tion by the formation of ion channels in target cell membranes. Three
isoforms (amoebapore A, B, and C) exist in amoebic cytoplasmic granule
s. They are composed of 77 amino acid residues arranged in four alpha-
helical domains. In order to analyze the structure-function relationsh
ips, 15 synthetic peptides of 24-25 residues were constructed based on
the assumption that the third helix is the membrane-penetrating domai
n and on the previous finding that positively charged residues are sig
nificant for activity. Activity of these short versions of amoebapores
was determined towards artificial and natural targets, such as liposo
mes, bacteria, erythrocytes and a human tumor cell line. It was found
that some of the novel peptides were highly active and showed a broade
r activity spectrum compared to the parent molecules.