A characteristic feature of the major histocompatibility complex (Mhc)
polymorphism in mammals is the existence of allelic lineages shared b
y related species. This trans-species polymorphism has thus far been d
ocumented only in primates, rodents, and artiodactyls. In this communi
cation we provide evidence that it also exists in cyprinid (bony) fish
es at the class II A and B foci coding for the alpha and beta polypept
ide chains of the class II alpha:beta heterodimers. The study has focu
sed on three species of the family Cyprinidae, subfamily Rasborinae: t
he zebrafish (Danio rerio), the giant danio (D. malabaricus), and the
pearl danio (D. albolineatus). The polymerase chain reaction was used
to amplify and then sequence intron 1 and exon 2 of the class II B loc
i and exon 2 of the class II A loci in these species. Phylogenetic ana
lysis of the sequences revealed the existence of allelic lineages whos
e divergence predates the divergence of the three species at both the
A and B loci. The lineages at the B locus in particular are separated
by large genetic distances. The polymorphism is concentrated in the pe
ptide-binding region sites and is apparently maintained by balancing s
election. Sharing of this unique Mhc feature by both bony fishes and m
ammals suggests that the main function of the Mhc (presentation of pep
tides to T lymphocytes) has not changed during the last 400 million ye
ars of its evolution.