The Index of Association (I,) has been proposed by Maynard Smith et al
. (1993) as a general method for characterizing the population structu
res of microorganisms as either: clonal, epidemic, cryptic species or
panmictic. With reference to the current debate surrounding the mode o
f reproduction in parasitic protozoa, this study explores (i) the suit
ability and limitations of the I, for characterizing populations of Ty
panosoma brucei s.l., and (ii) the idea that the significance of genet
ic differences between populations may be better understood if the evo
lution, spread and temporal stability of certain parasite genotypes ar
e also considered. Four populations of T. brucei from Cote d'Ivoire, U
ganda and Zambia are analysed using the I, and a complementary test fo
r linkage disequilibrium, test f of Tibayrenc, Kjellberg & Ayala (1990
). The two populations from Uganda are characterized as epidemic, whil
e the others appear more or less clonal; the merits of the two methods
are compared. The implications of the various population classificati
ons are discussed with reference to genotype longevity in each region;
the evolutionary and biomedical consequences of the genetic non-homog
eneity of T. brucei are reviewed.