Background: The common ABO allele sequences are known, but little or n
o genetic information is available on the rare but important A subgrou
ps. Study Design and Methods: Blood group ABO polymorphism was analyze
d in genomic DNA from 45 rare subgroup A individuals by sequence-speci
fic primer polymerase chain reaction and amplified fragment length pol
ymorphism investigating exons VI and VII in the ABO genes, These metho
ds are used to detect specific mutations only, and not all changes tha
t might be present can be detected. ABO genotypes discriminating six a
lleles (A', A(2), B, O-1, O-1var, and O-2) were determined. Results: T
he C-->T substitution at nucleotide position 467 (C467T) is not restri
cted to A(2) and cis-AB individuals, but was found also in some A subg
roups. Detection of the functionally more relevant C1060- single-point
deletion in A(2) was accomplished by a novel sequence-specific primer
polymerase chain reaction approach. A 100-percent correlation between
the C467T and the C1060- mutations was found, Fifteen of 17 samples s
howing the T646A mutation (described earlier in one case of A(x)) show
ed a positive correlation with the C771T mutation in a frequently occu
rring O-1var allele. The two exceptions were defined serologically as
A(x). Conclusion: Indications have been found of an evolutionary relat
ionship between A(1) alleles and A(el) and A(3) subgroups as well as b
etween A(2) alleles and A(end) and A(weak) subgroups. Genetic heteroge
neity within the A(x) and A(int) subgroups was also seen.