The temperate rain forest of Chiloe Island, Chile, is inhabited by an
endemic fox (Dusicyon fulvipes) first described by Charles Darwin and
now designated Darwin's fox. Despite morphological differences, Darwin
's fox has been considered only an insular subspecies of the mainland
chilla fox (D. griseus). This follows the assumption that the island p
opulation, with an estimated population of less than 500, has been sep
arated from the mainland chilla fox for only about 15,000 years and ma
y have received occasional immigrants from the mainland. Consequently,
this island population has not been protected as endangered or bred i
n captivity. Recently, a population of Darwin's fox was discovered on
the Chilena mainland 600 km north of Chiloe Island. This population ex
ists in sympatry with chilla and possibly culpeo (D. culpaeus) foxes,
which suggests that Darwin's fox may be reproductivity isolated. To cl
arify the phylogenetic position of Darwin's fox, we analyzed 344 bp of
mitochondrial DNA control-region sequence of the three species of Chi
lean foxes. Darwin's foxes from the island and mainland populations co
mpose a monophyletic group distinct from the two other Chilean fox spe
cies. This indicates that Darwin's fox was probably an early inhabitan
t of central Chile, and that its present distribution on the mainland
may be a relict of a once much wider distribution. Our results highlig
ht the ability of molecular genetic techniques to uncover historical r
elationships masked by recent events, such as local extinctions. The '
'rediscovery'' of Darwin's fox as a distinct species implies that grea
ter significance should be given to the protection of this species and
its unique habitat and to documenting the extent of its mainland dist
ribution.