Wetlands may protect fishes from introduced predatory fishes by provid
ing both structural and low-oxygen refugia for prey species tolerant o
f the conditions that prevail in these habitats. We examined the poten
tial of wetlands as refugia for fishes in Lake Nabugabo, Uganda, where
increased numbers of an introduced predator, the Nile perch (lates ni
loticus), coincided with the decline or disappearance of many indigeno
us species in the main lake. In 1993 and 1994 we sampled fishes in thr
ee wetland habitats: the marginal wetland ecotones of the lake, wetlan
d lagoons separated from the lake by densely vegetated marsh habitats,
and a stream separated from the lake by dense papyrus swamp. Fish dis
tributions in these wetlands were then compared to results from two ea
rlier fish surveys: the 1962 Cambridge expedition to Lake Nabugabo, wh
ich was conducted prior to the increase in the Nile perch population;
and a 1991-1992 survey of the open lake, which reported the disappeara
nce of 16 indigenous species. In our 1993-1994 surveys 9 of the 16 spe
cies not recovered in the 1991-1992 open-lake survey were found in the
wetland ecotones or beyond the margins of the lake in wetland lagoons
and tributaries. Three of these species were found only beyond the ma
rgins of the lake int he tributaries and lagoons within extensive wetl
ands. Three endemic haplochromine cichlids were abundant offshore in 1
962. Of these species one has disappeared and the others are now large
ly confined to inshore areas. Other species that were abundant in the
open waters of the lake in 1962 (e.g., the lungfish Protopterus aethio
picus) are now found primarily in wetlands. Two species, the characid
Brycinsu jacksonii and the cyprinid Rastrineobola argentea, are still
abundant in the open waters. This study highlights the need for quanti
tative survey work to identify wetland refugia in the Lake Victoria Ba
sin and suggest that some species thought to have disappeared in the m
ass extinction of fishes in Lakes Victoria and Kyoga may still survive
in refugia. Some fish populations could recover under effective ecosy
stem management.