J. Eyschen et al., P-31 NUCLEAR-MAGNETIC-RESONANCE STUDIES ON COENZYME BINDING AND SPECIFICITY IN GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE, Biochemistry, 35(19), 1996, pp. 6064-6072
Binding of NAD(P)(+) to wild type and a series of mutants of the glyco
lytic NAD-dependent glyceraldehyde-3-phosphate dehydrogenase (GAPDH) f
rom Bacillus stearothermophilus designed to alter the cofactor specifi
city [Clermont, S., Corbier, C., Mely, Y., Gerard, D., Wonacott, A., &
Branlant, G. (1993) Biochemistry 21, 10178-10184] has been studied by
P-31 NMR. In the mutants with the L187A and P188S substitutions, the
pyrophosphate signals are split, and the upfield resonance has been as
signed to the P(a) phosphate. Titration of the NADP(+) 2'-phosphate pK
(a) deduced from its chemical shift shows that the electrostatic envir
onment in the binding site is largely affected by the single point mut
ations. pK(a)s ranging from 7.7 for the L187A-P188S mutant to <5.7 for
the D32G-L187A-P188S and D32A-L187A-P188S mutants have been observed,
thus indicating that the binding of NADP(+) is modulated by the ioniz
ation state of its 2'-phosphate. In the quintuple mutant L33T-T34G-D35
G-L187A-P188S, designed in comparison with the photosynthetic NAD(P)-d
ependent GAPDH of the chloroplast, the 2'-phosphate has a pK(a) of 6.8
. As further stabilizing interactions like hydrogen bonds or positivel
y charged side chains would lower this pK(a), it is suggested that the
2'-phosphate ionization state of bound NADP(+) in chloroplastic GAPDH
is dianionic. The NADP(+) dissociation rate constants (k(off)) of the
three mutants D32G, L187A-P188S, and D326-L187A-P188S are higher at p
H 6.1 than at pH 8.1 and are similar at the same pH, indicating that t
he difference in binding affinity between these three mutants results
from the molecular recognition step or a conformational change upon bi
nding.