Previous work has shown that specific electrophoretic variants of aryl
sulfatase A occur more frequently among alcoholic patients than among
psychiatric and normal controls. The present study sequenced the gene
for two of these electrophoretic variants, IIIa and IIIb. Both contain
an A-to-G transition corresponding to substitution of Asn(350) by Ser
, with the resulting loss of an N-glycosylation site. The difference i
n electrophoretic mobility of their gene products is due to a mutation
in the IIIb gene resulting in the replacement of Arg(496) by His. Evi
dence is presented that individuals possessing either of two other ele
ctrophoretic variants, Va and Vb, are heterozygous for a normal ASA al
lele and either a IIIa or IIIb allele, respectively. Thus, the relatio
nship between the phenotype of the electrophoretic banding patterns, I
IIa, IIIb, Va, and Vb, and their corresponding genotypes has been eluc
idated.