The cer-Xer dimer resolution system of plasmid ColE1 is highly selecti
ve, acting only at sites on the same molecule and in direct repeat. Re
combination requires the XerCD recombinase and accessory proteins ArgR
and PepA, The Escherichia coil chromosome dimer resolution site dif a
nd the type II hybrid site use the same recombinase but are independen
t of ArgR and PepA and show no site selectivity. This has led to the p
roposal that ArgR and PepA are responsible for the imposition of const
raint. We describe here the characterization of a novel class of 'cond
itionally constrained' multimer resolution sites whose properties supp
ort this hypothesis. In the presence of ArgR and PepA, plasmids contai
ning conditionally constrained sites are monomeric, but in their absen
ce, extensive multimerisation is seen, A mutant ArgR derivative (ArgR1
10), which is defective in cer-mediated dimer resolution, remains able
to prevent plasmid multimerisation by a conditionally constrained sit
e. This implies that the accessory factors block recombination in tran
s rather than ensuring rapid multimer resolution. When the distance be
tween the ArgR and XerCD binding sites in a conditionally constrained
site was altered by a non-integral number of helical turns, the site b
ecame unconstrained. Constraint was restored by the insertion of a ful
l helical turn.