The location of the active site of the rapid enzyme, acetylcholinester
ase, near the bottom of a deep and narrow gorge indicates that alterna
tive routes may exist for traffic of substrate, products or solute int
o and out of the gorge, Molecular dynamics suggest the existence of a
shutter-like back door near Trp(84), a key residue in the binding site
for acetylcholine, in the Torpedo californica enzyme, The homology of
the Omega loop, bearing Trp(84), with the lid which sequesters the su
bstrate in neutral lipases displaying structural homology with acetylc
holinesterase, suggests a flap-like back door, Both possibilities were
examined by site-directed mutagenesis, The shutter-like back door was
tested by generating a salt bridge which might impede opening of the
shutter, The flap-like back door was tested by de novo insertion of a
disulfide bridge which tethered the Omega loop to the body of the enzy
me, Neither type of mutation produced significant changes in catalytic
activity, thus failing to provide experimental support for either bac
k door model, Molecular dynamics revealed, however, substantial mobili
ty of the Omega loop in the immediate vicinity of Trp(84), even when t
he loop was tethered, supporting the possibility that access to the ac
tive site, involving limited movement of a segment of the loop, is ind
eed possible.