Thirty-five pediatric lymphomas were categorized as either Burkitt's l
ymphoma (BL), lymphoblastic lymphoma (LL), or large cell anaplastic ly
mphoma (LCAL) by histological and immunophenotypic methods. They were
further characterized by molecular analysis of their antigen receptor
genes. Southern blot (SB) and polymerase chain reaction (PCR) techniqu
es were compared in the detection of immunogloblin heavy chain gene (I
gH) rearrangement. T cell receptor beta (TCR beta) rearrangements were
analyzed by SB and TCR gamma gene rearrangements by PCR. The PCR meth
od of IgH and TCR gamma gene analysis was preferred to the SB methods,
because there were fewer equivocal results in IgH gene analysis, TCR
gamma rearrangement was more frequently detected than TCR beta in both
lymphoblastic and large cell anaplastic lymphomas, and the PCR techni
que was more rapid, required less DNA, and could be used with archival
material. In addition, analysis of IgH gene rearrangement by PCR was
more specific for assessing B cell lineage. Although most of the molec
ular data were easily interpreted, occasional ambiguous results were s
een due to genetic events other than antigen receptor gene rearrangeme
nt affecting the genetic analysis. Thus, it is imperative to interpret
these genetic data in the context of adequate morphological and immun
ophenotypic analysis.