The plant cell vacuole has multiple functions, including storage of pr
oteins and maintenance of an acidic pH where proteases will have maxim
al activity. It has been assumed that these diverse functions occur in
the same compartment. Here, we demonstrate that antibodies to two dif
ferent tonoplast intrinsic proteins, alpha-TIP and TIP-Ma27, label vac
uole membranes of two different compartments within the same cell. The
se compartments are functionally distinct, because barley lectin, a pr
otein stored in root tips, is exclusively contained within the alpha-T
IP compartment, while aleurain, a protease that serves as a marker for
an acidified vacuolar environment, is exclusively contained within th
e TIP-Ma27 compartment. As cells develop large vacuoles, the two compa
rtments merge; this may represent a process by which storage products
in the alpha-TIP compartment are exposed to the acidic lytic TIP-Ma27
compartment for degradation.