Aim-To correlate immunohistochemical staining with single strand confo
rmation polymorphism (SSCP) analysis of the p53 gene in colorectal can
cer in order to understand how the findings provided by the two techni
ques complement each other in defining p53 functional status. Methods-
Frozen tumour tissue from 94 patients with colorectal cancer was studi
ed for p53 protein accumulation and gene mutations. Accumulation of p5
3 protein was detected by immunohistochemistry using PAb1801 and BP53-
12-1 monoclonal antibodies. The findings were then compared with SSCP
analysis of exons 5 to 8 of the p53 gene. All cases with a positive re
sult by SSCP analysis were confirmed by sequencing. Results-Nuclear st
aining was observed in 51 (54.2%) cases. SSCP analysis of the DNA ampl
ified by PCR revealed that the electrophoretic pattern had shifted in
30 cases; sequence analysis confirmed the occurrence of a mutation in
29 cases and of a polymorphism in one. In 27 cases both assays gave a
positive result, and in 40 both were negative; therefore, concordance
between PCR-SSCP and immunohistochemistry was seen in 72% of cases. Co
nclusion-The data indicate that positive immunostaining corresponds wi
th the presence of a mutation in most, but not all, cases studied; oth
er mechanisms could be responsible for stabilisation and accumulation
of p53 protein in the nucleus. Nonsense mutations which do not confer
stability on the protein will not be detected by immunohistochemistry
and false negative results can also occur with SSCP analysis.