A method for constructing ab initio polarizable intermolecular potenti
als for flexible molecules within the NEMO scheme is presented. In thi
s scheme the total interaction energy between two molecules is calcula
ted from the properties of the interacting molecules. It is shown that
the changes in the charge distribution of a flexible molecule due to
conformational changes can be constructed from the interaction of a na
tive charge distribution and a set of distributed polarizabilities. It
is further shown that this extension of the model results in a straig
htforward way to calculate the interaction energy for a given conforma
tion (inter- and intramolecular) of a molecular complex. As a test, we
have constructed the intramolecular potential for the 1,2-dimethoxyet
hane (DME) molecule and the intermolecular potential between a flexibl
e DME molecule and water. The potential obtained is compared to the re
sults from ab initio quantum chemical calculations at the SCF level fo
r the DME-water complex. For the free DME molecule, it is found that a
conformation which is anti around all C-C and C-O bonds is favored, w
hereas inclusion of a water molecule favors anti-gauche-anti and anti-
gauche(+)-gauche(-) around the C-O, C-C, and C-O bonds, respectively.