Atomic force microscopy has been applied to the study of plant chromos
omes from cereal grasses Triticum aestivum (bread wheat), Triticum tau
schii, and Hordeum vulgare (barley). Using standard mitotic metaphase
squashes, high resolution images have been obtained of untreated chrom
osomes and also of chromosomes after C-banding, N-banding, and in situ
hybridization. The true 3-dimensional nature of the images permits de
tailed analysis of the surface structure and, on untreated uncoated ch
romosomes, surface features on a length scale consistent with nucleoso
me structures have been observed. C+ and N+ regions are manifest as ar
eas of high relief on a slightly collapsed chromosome structure. In si
tu hybridization leads to a more severe degradation of the native stru
cture, although it is still possible to correlate the optical signal w
ith the topography of the hybridized chromosome.