We present a genetic map based on microsatellite polymorphisms for the
African human malaria vector, Anopheles gambiae. Polymorphisms in lab
oratory strains were detected for 89% of the tested microsatellite mar
kers. Genotyping was performed for individual mosquitoes from 13 backc
ross families that included 679 progeny. Three linkage groups were ide
ntified, corresponding to the three chromosomes. We added 22 new marke
rs to the existing X chromosome map, for a total of 46 microsatellite
markers spanning a distance of 48.9 cM. The second chromosome has 57 a
nd the third 28 microsatellite markers spanning a distance of 72.4 and
93.7 cM, respectively. The overall average distance between markers i
s 1.6 cM (or 1.1, 1.2, and 3.2 cM for the X, second, and third chromos
omes, respectively). In addition to the 131 microsatellite markers, th
e current map also includes a biochemical selectable marker, Dieldrin
resistance (Dl), on the second chromosome and five visible markers, pi
nk-eye (p) and white (w) on the X, collarless (c) and lunate (lu) on t
he second, and red-eye (r) on the third. The cytogenetic locations on
the nurse cell polytene chromosomes have been determined for 47 marker
s, making this map an integrated tool for cytogenetic, genetic, and mo
lecular analysis.