V. Kvasnicka et J. Pospichal, SIMULATED ANNEALING CONSTRUCTION OF MOLECULAR GRAPHS WITH REQUIRED PROPERTIES, Journal of chemical information and computer sciences, 36(3), 1996, pp. 516-526
Citations number
34
Categorie Soggetti
Information Science & Library Science","Computer Application, Chemistry & Engineering","Computer Science Interdisciplinary Applications",Chemistry,"Computer Science Information Systems
The method of simulated annealing for the construction of molecular gr
aphs with required properties was studied. The method depends on the a
lready available functional relationship that transforms molecular str
uctural features into a numerical value of a property. The simulated a
nnealing was initialized by a randomly generated molecular graph. A mo
lecular graph was perturbed onto another molecular graph so that start
ing from a randomly selected point the rest of the numerical code of t
he current graph was replaced by a randomly generated code. The accept
ance of the generated code to the next process of simulated annealing
was solved by the Metropolis criterion. After the prescribed number of
steps the temperature was multiplicatively decreased. Two types of mo
lecular graphs were studied. The first type of molecular graphs was ac
yclic graphs (trees) that are simply represented by a numerical code c
omposed of the same number of entries as the number of vertices in mol
ecular graphs. perturbation operations consist of simple changes of nu
merical codes. The second type of molecular graphs was cyclic connecte
d graphs (q > p - 1, where p and q are numbers of vertices and edges,
respectively) that are represented by the lower-triangle part of adjac
ency matrices. The efficiency of the proposed method is illustrated by
model calculations, wherein molecular graphs with required properties
are constructed.