FASTALERT - AN AUTOMATIC SEARCH SYSTEM TO ALERT ABOUT NEW ENTRIES IN BIOLOGICAL SEQUENCE DATA-BANKS

Citation
F. Eggenberger et al., FASTALERT - AN AUTOMATIC SEARCH SYSTEM TO ALERT ABOUT NEW ENTRIES IN BIOLOGICAL SEQUENCE DATA-BANKS, Computer applications in the biosciences, 12(2), 1996, pp. 129-133
Citations number
17
Categorie Soggetti
Mathematical Methods, Biology & Medicine","Computer Sciences, Special Topics","Computer Science Interdisciplinary Applications","Biology Miscellaneous
ISSN journal
02667061
Volume
12
Issue
2
Year of publication
1996
Pages
129 - 133
Database
ISI
SICI code
0266-7061(1996)12:2<129:F-AASS>2.0.ZU;2-C
Abstract
This paper describes a new tool enabling awareness of new sequence dat abank entries of interest. The FastAlert system relieves the researche r from the burden of repeating FASTA searches in order to keep up with the rapidly growing amount of information found in biological sequenc e databanks. The query sequence can be submitted from any computer con nected to the Internet. Upon registration, the databank, including the updates, is scanned at periodic intervals with the sequence provided The results, so-called FastAlert reports, ave delivered via electronic mail. The reports contain the FASTA best-scores list and the similari ty statistics for each entry listed.