There is no complete understanding of how serine protease inhibitors o
f the serpin family inhibit their target enzymes. Structural and bioch
emical studies have suggested that serpins utilize a mechanism that is
distinct from the standard mechanism of inhibition proposed for most
small protein protease inhibitors. Proton nuclear magnetic resonance s
pectroscopy was used in the present study to demonstrate a fundamental
difference in the atomic environment of the catalytic triad of enzyme
in complex with serpins when compared to uncomplexed enzyme and enzym
e in complex with standard mechanism inhibitors. This work demonstrate
s that the active site of chymotrypsin is distorted when complexed to
a serpin and makes tenable a mechanism of inhibition in which the serp
in induces a conformational change in the enzyme that dramatically red
uces or completely abrogates the catalytic activity of the protease.