With the systematic sequencing of the yeast genome, yeast biology has
entered a new era where novel challenges have to be faced. One challen
ge is the identification of the function of the several hundred novel
genes discovered by genome sequencing. Another is to understand how al
l yeast genes act in concert to ensure and maintain cell organization.
Two-dimensional (2-D) gel electrophoresis is the technique of choice
to take up these challenges because it provides the opportunity of obt
aining an overall view of genome expression. In prospect of these stud
ies we have undertaken the construction of a yeast 2-D gel protein dat
abase that contains information on polypeptides of the yeast protein m
ap. In this paper we report the information presently contained in thi
s database. The reported information includes the identification of 25
0 protein spots and the characterization of polypeptides corresponding
to N-terminal acetylated proteins, mitochondrial proteins, glucose-re
pressed proteins, heat shock induced proteins and proteins encoded by
intron-containing genes. In all, 600 spots are annotated. These data c
an be accessed on the Yeast Protein Map server through the World Wide
Web network.