A more general approach to native (amide-forming) chemical ligation of
unprotected peptide segments is described that extends the technique
beyond the previously reported X-Cys ligation site to now include X-Gl
y and Gly-X ligation sites. A peptide, [peptide(1)](alpha)COSR, is rea
cted with a second peptide, HSCH2CH2(O)-N-alpha[peptide(2)], under con
ditions promoting thioester exchange. The intermediate thioester-linke
d product rearranges to form a ligation product linked by an N-substit
uted amide bond. If desired, the -oxyalkyl substitution on the amide b
ond can be removed by facile treatment with Zn in acidic medium to giv
e a native peptide bond at the ligation site. The techniques described
have been employed to ligate small model peptide segments to yield pe
ptides with native or modified backbones, proving the feasibility of t
his approach.