Four litters produced by father-daughter matings (back crosses) result
ing in 35 animals with a theoretical inbreeding coefficient of 25% wer
e typed with 21 independent informative markers. The differences betwe
en the two founder animals were estimated, based on the marker informa
tion, and it tons found that the founder boar had higher genetic poten
tial for proportion of lean meat and lower genetic potential for growt
h than the founder sow. The proportion of the genome of each offspring
which was identical by descent was investigated On the basis of these
markers the realized inbreeding teas found to vary between 7 and 47%.
The linear decrease in weight at days 1, 26 and 136, average daily ga
in and proportion of lean meat regressed on the realized inbreeding we
re estimated to 0.6 kg, 2.4 kg, 18 kg, 95 g/day and 15 g/kg, respectiv
ely. For weight at day 88 a corresponding linear increase of 11 kg was
observed. The joint effect of founder differences and realized inbree
ding were as expected negative and statistically significant for all g
rowth traits.