Observations of the vertical structure of atmospheric temperature chan
ges over the past three decades show that while the global-average low
er atmosphere has warmed, the upper troposphere and lower stratosphere
have cooled. While these changes may be due to observed anthropogenic
increases of greenhouse,eases, decreases of lower stratospheric ozone
, and increases of tropospheric aerosols, the changes may also have be
en caused by natural unforced internal fluctuations of the climate sys
tem. Here we use the results of a 1000-year simulation from a mathemat
ical model of the coupled ocean-atmosphere-land system performed witho
ut any changes in external forcing, so that we may consider its variat
ions as a surrogate for free, internally-generated, natural fluctuatio
ns of the climate system. When the global mean surface air temperature
is warm in the model, the lower troposphere, upper troposphere and lo
wer stratosphere are also warm over most of the Earth, in contrast to
the observations of the last three decades and to model simulations of
the forced climate response due to increased greenhouse gases. The ob
served temperature change of the past three decades is therefore unlik
ely to have been caused solely by natural internal variations of the c
limate system, thereby strengthening the argument that these changes c
an at least partly be attributed to anthropogenic activities.