Commercial honey bee queens in the United States are produced primaril
y in two geographically separated regions, one in the southeastern US
and the other in central California. We used mitochondrial DNA and all
ozyme variation to characterize 178 breeder queen colonies from 22 Cal
ifornia apiaries. Two colonies had the mtDNA haplotype characteristic
of Apis mellifera mellifera, the first subspecies known to be introduc
ed to the US, and 176 had the haplotype associated with A m carnica an
d A m ligustica, the most popular commercially available subspecies. M
alate dehydrogenase (Mdh) allele frequencies for the western populatio
n, Mdh(65) = 0.65, Mdh(80) = 0.09 and MDh(100) = 0.26, were significan
tly different from those previously reported for feral and southeaster
n commercial populations. Among the California samples, bees described
by apiarists as 'Italian' or 'Carniolan' were significantly different
from each other based on Mdh allele frequencies. Five other enzymes k
nown to be polymorphic in honey bees were invariant in the California
samples. Differentiation between populations in the United States sugg
ests they may act as reservoirs for genes that can be useful for bee b
reeding programs.