The chB6 molecule is expressed on chicken B cells throughout most of t
heir development, as well as on some non-lymphoid cells. It has long b
een used as an allotypic marker in important studies of B-cell develop
ment, though its function is unknown. We isolated a chB6 cDNA by expre
ssion cloning and sequenced two further alleles following polymerase c
hain reaction amplification. The results show that chB6 is a typical t
ype I transmembrane protein, highly glycosylated in the extracellular
region and carrying a large intracellular region. It has no recognizab
le similarity to known mammalian molecules and thus represents a uniqu
e B-cell marker. Its presence in chickens may be related to difference
s in the properties of B-cell development between chickens and mammali
an species. The sequences of the different alleles of this gene reveal
ed a higher level of polymorphism than expected. A restriction fragmen
t length polymorphism linked to the CHB6 gene has been used to determi
ne its location on the linkage map of the chicken genome, which will a
llow the definitive evaluation of reported associations with disease r
esistance.