The dominant kan(r) marker gene plays an important role in gene disrup
tion experiments in budding yeast, as this marker can be used in a var
iety of yeast strains lacking the conventional yeast markers. We have
developed a loxP-kanMX-loxP gene disruption cassette, which combines t
he advantages of the heterologous kan(r) marker with those from the Cr
e-lox P recombination system. This disruption cassette integrates with
high efficiency via homologous integration at the correct genomic loc
us (routinely 70%). Upon expression of the Cre recombinase the kanMX m
odule is excised by an efficient recombination between the loxP sites,
leaving behind a single loxP site at the chromosomal locus. This syst
em allows repeated use of the kan(r) marker gene and will be of great
advantage for the functional analysis of gene families.