Two sets of cucumber (Cucumis sativus L.) germplasm were used to deter
mine the potential use of restriction fragment length polymorphisms (R
FLPs) for estimating genetic relationships. Sixteen accessions [15 dom
esticated variety sativus and one feral variety hardwickii (PI 183967)
] of diverse origin were used to assess RFLP variation in cucumber, an
d to determine if genetic relationships based on RFLPs were similar to
those obtained by isozyme analysis. Additionally, 35 commercial lines
or cultivars were surveyed to determine genetic relationships among a
nd within common cucumber types (narrow genetic base). The 16 accessio
ns were surveyed with 440 low copy clones from two libraries (Pst I pa
rtial genomic and cDNA) using two restriction enzymes. Data from a sub
set of 104 random (mapped and unmapped) and a set of 30 mapped RFLPs w
ere used to estimate genetic relationships among the 16 cultigens. Var
iability was low among RFLPs (33% of all probes) and putative alleles
(similar to 2.2 polymorphic fragments/probe). RFLP variation between s
ativus lines and hardwickii (21 +/- 4%) was greater than among sativus
lines (12 +/- 2 %). RFLPs among the 16 accessions revealed genetic re
lationships which agree with those obtained using isozymes. Genetic re
lationships estimated using mapped and unmapped RFLPs were similar. Th
e 35 elite lines were surveyed using a set of 40 RFLPs from 3 librarie
s (Pst I and EcoR I partial genomic and cDNA) to evaluate the discrimi
natory value of RFLPs among and between commercial cucumber types. The
RFLP-derived genetic relationships among this germplasm were in agree
ment with predictions based on fruit type and pedigree information. Th
us, RFLPs are a useful addition to the morphological characters and is
ozyme loci currently used for taxonomic classification and plant varie
ty protection of cucumber.