Ecologists have long been interested in the differences that exist amo
ng communities. If species adapted rapidly and without constraint, and
if any lineage could occur in any community, then we would expect dif
ferences in community structure to be indicative of environmental diff
erences. Because lineages differ in their evolutionary potential and a
re geographically restricted, however, comparisons of community struct
ure must take account of communities' histories. Phylogenetic informat
ion about the constituent lineages in a community can allow lineage ef
fects to be factored out, thus allowing an assessment of environmental
determinants of community structure. In addition, phylogenetic inform
ation permits understanding of how communities have evolved through ti
me and suggests hypotheses that may be tested using extant communities
. Methodological difficulties with the application of these methods to
community ecological issues are also discussed.