In order to investigate the molecular mechanisms that alter intron siz
e, we conducted an extensive interspecies comparison of homologous int
rons among three mammalian groups: human, artiodactyls, and rodents, T
he size differences of introns were statistically significant among al
l three groups (longest intron was for human and shortest for rodents)
, and appear to be due to the accumulation of small deletions, accordi
ng to the separate count of insertion and deletion frequencies, The di
stribution of intron size differences also has a shape similar to that
for the distribution of insertion/deletion sizes found in pseudogenes
. It is suggested that introns are selectively neutral to small-scale
changes of the genome size, which inherently contain the bias of favor
ing short deletions against short insertions.